PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012160
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family M-type_MADS
Protein Properties Length: 263aa    MW: 30848.5 Da    PI: 9.1915
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420032PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141551743
               HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               +  + tf kR++g+ KK eELS+LC++ev+++ f+++
  Psi012160 15 TSGNMTFMKRKKGLKKKVEELSILCGVEVCMVCFGPQ 51
               55678*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.086149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-212102IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003197.7E-151551IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-93859IPR002100Transcription factor, MADS-box
PfamPF171818.7E-15213263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRAKITIKW IPRDTSGNMT FMKRKKGLKK KVEELSILCG VEVCMVCFGP QMDQQTASDH  60
PHVWPGKSKA LEIVERYRSL SKEEQENKKL DNSSFLEQRI KKLKVELSIK RKENRELEME  120
SVYPWDSCLN FFTDEQLKDL VDYIDIRLET VYDRINFLSR HEREIYNGVX ERYGRVLQFL  180
ILMVVMMYAF VDSGDSDLVI KPTGEQSSRR GLVGSSPPDC SFKCKRCTPC VRVKVPIHPR  240
ATPAQDYYPE VWKWKCKNRQ YNP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AE401e-119D5AE40_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-19AGAMOUS-like 80