PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012170
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26768.1 Da    PI: 6.9533
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-30893PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rqvtfskRr+g++KKAeELS+LC+a+va+i+fsstgkl++yss
  Psi012170  9 KRIANASARQVTFSKRRKGLFKKAEELSILCAADVALIVFSSTGKLHDYSS 59
               79***********************************************96 PP
2K-box67.83.7e-238717017100
      K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + +++k k+++e + +++R++ G++Le Lsl++LqqLe+qL+ +l+ +R +K+e+++++i+ lq k +++ een++L+++++e
  Psi012170  87 ESPDMKKRKQQVEDISQTLRNMHGKELEGLSLNDLQQLEEQLNMGLNCVRLQKDEYMVKEINGLQDKGRRITEENTELHRQIKE 170
                56678999*************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.128161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002655.87E-37274No hitNo description
PRINTSPR004044.2E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-30377IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.61884174IPR002487Transcription factor, K-box
PfamPF014867.9E-1990168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAREKIELKR IANASARQVT FSKRRKGLFK KAEELSILCA ADVALIVFSS TGKLHDYSSS  60
SMKMILDNYN LYSNTIQKDG RPNPELESPD MKKRKQQVED ISQTLRNMHG KELEGLSLND  120
LQQLEEQLNM GLNCVRLQKD EYMVKEINGL QDKGRRITEE NTELHRQIKE GYGLRLENND  180
ADESFFIGLS ENKDPQSSAS VTSSAFNFRL HKSPNKDYED SDTSLQLGLS SQSKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18173173MEF2C
5f28_B3e-18173173MEF2C
5f28_C3e-18173173MEF2C
5f28_D3e-18173173MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895PDMKKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.168350.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075278.12e-62MADS-box protein SVP-like
SwissprotQ9FUY65e-57JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB8LNB91e-168B8LNB9_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t012e-61(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]