PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012236
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 349aa    MW: 37662.1 Da    PI: 9.2737
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649642PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-8143PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08152178127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC+++  +  C++Gd+C+FaHg+
  Psi012236 152 FKTRLCNRYGTNEGCQFGDKCHFAHGE 178
                69*********99************96 PP
2zf-CCCH38.32.2e-12315338226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kt+lC ++a+ GtC +GdrC+FaHg
  Psi012236 315 KTKLCENYAK-GTCTFGDRCNFAHG 338
                9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.89781110IPR000571Zinc finger, CCCH-type
SMARTSM003560.019151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366151179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8152182IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5152178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-13152182IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-14225303IPR004088K Homology domain, type 1
SMARTSM003222.5E-8230300IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.0E-14230299IPR004088K Homology domain, type 1
PROSITE profilePS5008413.397231295IPR004088K Homology domain, type 1
PfamPF000131.6E-10233297IPR004088K Homology domain, type 1
CDDcd001058.60E-12233295No hitNo description
PfamPF083520.7303337IPR013563Oligopeptide/dipeptide ABC transporter, C-terminal
SuperFamilySSF902298.63E-9312343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-14312343IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-8313339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.075313340IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10315338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015833Biological Processpeptide transport
GO:0003723Molecular FunctionRNA binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
XPNVPGARCC YCYCYLSTFR GVPASRRNRE QRDRKGSSVK SAGERSSMDP RKKPKTQLHP  60
NDNGDANPNS TEKESISTAL GSKSKEMPNQ TPQSSGCPFG EGCHYLHYVP GGVNAIPPIP  120
TLGNTFGAAS RKAIGFTPSV PPLDKPDPGL GFKTRLCNRY GTNEGCQFGD KCHFAHGEKE  180
LRKGNVLAKD LDRERIAGPY SSMAASGVDS GHSLYRDPPP GTAAAANFGA SSTAKISIDA  240
SLASCIIGKG GVNTKQIFRI TGTKMFIKEN ESNPNLKNIE LEGSFDQIKQ ATAMVRELIM  300
HNEIQSAKPY VQNRKTKLCE NYAKGTCTFG DRCNFAHGAN ELREQSAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955PRKKPKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.112610.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-91PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R05e-79C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9NU060.0A9NU06_PICSI; Uncharacterized protein
STRINGXP_010265899.15e-91(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-44C3H family protein