PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012292

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 392aa MW: 43803 Da PI: 7.7529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55421109	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	229	275	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka ++ + ++Y++sLq Psi012292 229 HSLAERVRREKIGERMKLLQDLVPGC----NKITGKAVMVDEIINYVQSLQ 275 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.77E-8	222	279	No hit	No description
SuperFamily	SSF47459	1.57E-15	222	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.862	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-15	225	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	229	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-8	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MALEGNGNYV FDGLTNCNKV SANSALNYQT SSASWHSAIA GRALNMNHQA SLQATAEGSF 60 RPVDSSYSLD ALFPFSVPVL DKVNRRTHQQ NVKLVSERSL QHNLSSSIRV QQPGIEQKCN 120 TSGEECSSSE QSTGGRKRRT LPNDKARFHD STFTSPSEKN TENESKSKRP KSAEAMKEND 180 DSKSDAEQRT HTGRPEVNPR QSEQSAKPPE PPKDYIHVRA RRGQATDRHS LAERVRREKI 240 GERMKLLQDL VPGCNKITGK AVMVDEIINY VQSLQCQVEF LSMKLEAVNP KLACNMEGFL 300 ARDMLEPSFN TAKAYPQFHQ PEWLAMQVGT SCEMEEQCMG NARQVALRRI MNENSPLIEG 360 CGDAKISNVW DDELQNVVRL GVGQNNTSFF HI

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MALEGNGNYV FDGLTNCNKV SANSALNYQT SSASWHSAIA GRALNMNHQA SLQATAEGSF  60
RPVDSSYSLD ALFPFSVPVL DKVNRRTHQQ NVKLVSERSL QHNLSSSIRV QQPGIEQKCN  120
TSGEECSSSE QSTGGRKRRT LPNDKARFHD STFTSPSEKN TENESKSKRP KSAEAMKEND  180
DSKSDAEQRT HTGRPEVNPR QSEQSAKPPE PPKDYIHVRA RRGQATDRHS LAERVRREKI  240
GERMKLLQDL VPGCNKITGK AVMVDEIINY VQSLQCQVEF LSMKLEAVNP KLACNMEGFL  300
ARDMLEPSFN TAKAYPQFHQ PEWLAMQVGT SCEMEEQCMG NARQVALRRI MNENSPLIEG  360
CGDAKISNVW DDELQNVVRL GVGQNNTSFF HI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5AB87	0.0	D5AB87_PICSI; Uncharacterized protein
STRING	POPTR_0002s23650.1	1e-70	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-54	bHLH family protein