PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012483
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LFY
Protein Properties Length: 202aa    MW: 23418.4 Da    PI: 8.8368
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-431477PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY347.33e-10636202202368
    FLO_LFY 202 kseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPk 301
                + e++ d+++++ + +++ gedge+r+rehPfivtepge+argkknGLDYLfdLyeqC++fLl+vq+iake+GekcPtkvtnqvfr+ak++ga+yinkPk
  Psi012483  36 SDERKADTNKQKRRRSKEPGEDGEDRPREHPFIVTEPGELARGKKNGLDYLFDLYEQCGKFLLEVQRIAKEKGEKCPTKVTNQVFRHAKHNGAVYINKPK 135
                2234455555666667779********************************************************************************* PP

    FLO_LFY 302 mrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiW 368
                mrhYvhCYalhcLd+e+sn+lrr +kergenvGawrqacy+plvaia++++wdi+++fn++++L+iW
  Psi012483 136 MRHYVHCYALHCLDSEQSNHLRRLYKERGENVGAWRQACYYPLVAIARENNWDIEGIFNRNEKLKIW 202
                ******************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.0E-8934202IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNIASCKDST LILQNSNQAQ FCGSGLIGVP EHSSESDERK ADTNKQKRRR SKEPGEDGED  60
RPREHPFIVT EPGELARGKK NGLDYLFDLY EQCGKFLLEV QRIAKEKGEK CPTKVTNQVF  120
RHAKHNGAVY INKPKMRHYV HCYALHCLDS EQSNHLRRLY KERGENVGAW RQACYYPLVA  180
IARENNWDIE GIFNRNEKLK IW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A5e-89512022153FLORICAULA/LEAFY HOMOLOG 1
4bhk_B5e-89512022153FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.141351e-150shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both male and female cones, vegetative buds and needles, but not in the roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966714.24e-91floricaula/leafy-like protein FL1
RefseqXP_002978027.14e-91floricaula/leafy-like protein FL1
SwissprotO044071e-152NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLQ5UKZ21e-151Q5UKZ2_PICAB; NEEDLY-like protein (Fragment)
STRINGEFJ206842e-90(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.14e-80floral meristem identity control protein LEAFY (LFY)