PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012582
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 137aa    MW: 14891.5 Da    PI: 10.0142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55417471PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l  +++++G g W+tI +          R+  ++k++w++
        Psi012582  5 KQKWTSEEEGALRAGIEKYGAGKWRTIQKDPEfgrclAARSNVDLKDKWRN 55
                     79****************************9999***99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.586161IPR017930Myb domain
SuperFamilySSF466891.94E-15258IPR009057Homeodomain-like
SMARTSM007171.7E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-14556IPR009057Homeodomain-like
PfamPF002492.3E-7555IPR001005SANT/Myb domain
CDDcd116605.96E-21656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGAPKQKWTS EEEGALRAGI EKYGAGKWRT IQKDPEFGRC LAARSNVDLK DKWRNMSVSA  60
GGQGSRDKVK TPRVKAIASL PYSSVTAEST TVFSIEATPS TTPDNLISPK SSSNGKNHSP  120
RYDGMILEAL TIMQDPX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.193070.0needle
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910098.14e-51single myb histone 4
SwissprotQ8W1192e-34SMH4_MAIZE; Single myb histone 4
TrEMBLA0A0D6QZP22e-54A0A0D6QZP2_ARACU; Uncharacterized protein
STRINGXP_008797902.11e-49(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-34MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]