PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012592
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 255aa    MW: 28891.2 Da    PI: 8.1589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-17190PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.54e-34141571128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk.sgyW 83 
                lp G++F+Ptd+el+ e+L+ kv+ ++      ++++   i    +i++++P++Lp  ++ +    +fF++ +k+y+tg+rk+r+        t+ + +W
  Psi012592  14 LPYGVKFDPTDQELI-EHLQGKVAFDNsaahplIDEFIPtIGGEdGICYTHPEKLP-GISRDGLIRHFFHRPSKAYTTGTRKRRKiqtacdesTEgETRW 111
                699************.99****998886665443332223554436**********.555555677******************867777776334778* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++vl+ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Psi012592 112 HKTGKTRPVLV-NGKQKGCKKILVLYtnFGKHKKPEKTNWVMHQYHL 157
                ***********.999***********554799999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-396176IPR003441NAC domain
PROSITE profilePS5100533.1914176IPR003441NAC domain
PfamPF023655.6E-1615157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
QIERREALQD WPGLPYGVKF DPTDQELIEH LQGKVAFDNS AAHPLIDEFI PTIGGEDGIC  60
YTHPEKLPGI SRDGLIRHFF HRPSKAYTTG TRKRRKIQTA CDESTEGETR WHKTGKTRPV  120
LVNGKQKGCK KILVLYTNFG KHKKPEKTNW VMHQYHLGSQ EEEKEGELVV SKIFYQTQPR  180
QCNWEKATYA GDACRASVTE ATQVSERCTA GESVSSTARH TYNHLEQQTK GTHSSHNLSL  240
AQSRLESSDQ VSISE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001329813.11e-111NAC domain containing protein 75
SwissprotQ9M0F81e-111NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA11e-150E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGCagra.0495s0057.1.p1e-110(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-114NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]