PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012643

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GeBP

Protein Properties

Length: 478aa MW: 53971.6 Da PI: 6.3215

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55422261	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-6164	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.9	1.8e-10	147	238	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgke.psfskehdqkifelskkiWg 97 + ws eDei+l +++ a g + +++afye +k+ ++++ s+ q+ eK+rr++ +f + +++ ak ++ + ++ h+ + +++ k+iWg Psi012643 147 KKWSAEDEISLANAVLASSA--G--GQVNMTAFYERAKETLQSE-SHGQIYEKMRRMRSRFWTIESQlrdAKIAEDfFPYRSMHEAELYKVWKQIWG 238 67***********98744..3..3468*********98.789*********9998886554433441457899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-13	147	238	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
XGGSFLSPYF ITSNMSSSAL PSSSDDGDAR SHAKPNSTPP TKSSAASSDS EPKTPRRSSV 60 MKKSRDGSRP DTRVGPKQSR DRLEAKLPAS KKKKNSRKTG VSGNKSQIDI EELLAQTYPK 120 EPSVLGDETH ITNGLEMPSE HAKDTAKKWS AEDEISLANA VLASSAGGQV NMTAFYERAK 180 ETLQSESHGQ IYEKMRRMRS RFWTIESQLR DAKIAEDFFP YRSMHEAELY KVWKQIWGRH 240 ERRNEAAQDI EMEQNRELRS RSHARQVHNG DVNEDRHESR TEAAHMNGEP RSHSHAMQRQ 300 NGEVTDDPPE EEEEEEEHQQ AEEEDNVVET AGKTPSRVAC NHDEEFNLIQ TEIKALVCKV 360 KNNVQTMLDD TEAKMEGLID SLFKRAVVAA QVQSLGSEVG IGSCLCSSLS RRMKELECVR 420 SVREFRGLNE AEAKILQQKW RKHQIEELRT FSGRLELLQE ECKLCIKDLE TANSSHNS

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

XGGSFLSPYF ITSNMSSSAL PSSSDDGDAR SHAKPNSTPP TKSSAASSDS EPKTPRRSSV  60
MKKSRDGSRP DTRVGPKQSR DRLEAKLPAS KKKKNSRKTG VSGNKSQIDI EELLAQTYPK  120
EPSVLGDETH ITNGLEMPSE HAKDTAKKWS AEDEISLANA VLASSAGGQV NMTAFYERAK  180
ETLQSESHGQ IYEKMRRMRS RFWTIESQLR DAKIAEDFFP YRSMHEAELY KVWKQIWGRH  240
ERRNEAAQDI EMEQNRELRS RSHARQVHNG DVNEDRHESR TEAAHMNGEP RSHSHAMQRQ  300
NGEVTDDPPE EEEEEEEHQQ AEEEDNVVET AGKTPSRVAC NHDEEFNLIQ TEIKALVCKV  360
KNNVQTMLDD TEAKMEGLID SLFKRAVVAA QVQSLGSEVG IGSCLCSSLS RRMKELECVR  420
SVREFRGLNE AEAKILQQKW RKHQIEELRT FSGRLELLQE ECKLCIKDLE TANSSHNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5A857	0.0	D5A857_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-06	DNA-binding storekeeper protein-related transcriptional regulator