PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012779
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 454aa    MW: 49170.6 Da    PI: 7.1426
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420981PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-18337PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.83.2e-27188269371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   +++k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Psi012779 188 GRGLRQFSMK---VCQKVESkGRTTYNEVADELVAEyanpnsalispdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 269
                689*******...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-46183274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.9E-35186269IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-21189270IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-25189269IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011382.2E-50276453IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-38277381No hitNo description
PfamPF087814.6E-36287382IPR014889Transcription factor DP, C-terminal
CDDcd144585.16E-40288377IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLPRGPSRRG GSTTGPRSGV RSRKTTITQS HVANNPNNTS SYNNSSISNS NGVHNDPIHE  60
AGIHSYAEGL GIVQNGAIAT PIGMNATEYN PDAAKEEGEY PSTISNGMVG GYSGNLTSLP  120
GQSVSMDSGS NCSPSRGSDV VMATPGPSSA FARLHHLDGQ GEDFESPDTV GTRKKKRGPR  180
AIGGEKGGRG LRQFSMKVCQ KVESKGRTTY NEVADELVAE YANPNSALIS PDQQQYDEKN  240
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PSTSPNDLEP ERQIXMGLRS RIEKKMGYLQ  300
ELEDQIIGLQ NLVKRNERLY GSGNTPSGGV ALPFILVQTR PQATVEIEIS EDMQLVHFDF  360
NSTPFELHDD AYVLKAMGFC EKPFTDGMDV TGHDSFANGA GFGENNIPIT NMYRHSLPSH  420
LRTTGGSFSM SCATGKNCTS PPVPGILKAR VKHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35180274193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253993.11e-157PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-126DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD5ABL10.0D5ABL1_PICSI; Uncharacterized protein
STRINGXP_010241817.11e-156(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP