PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012823
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 443aa    MW: 48774.8 Da    PI: 4.8951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420860PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-7577PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13248299155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P     + ++ + a+i   ++e+Ik+Lq
  Psi012823 248 QRMTHIAVERNRRKQMNEHLAVLRSLMPGF---YVQRGDQASIIGGVIEFIKELQ 299
                79***************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-13245303No hitNo description
SuperFamilySSF474599.55E-18246312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.466247298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-14248311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10248299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-11253304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVGEAEALFL QGRSSNLAAA SDPSLLIPSL SINMIESGED QEATPMGDIL CDIFSSHEFS  60
HGNLAANSPV QDFFGILDFL ETDNHQEASK FISLIEEESS TCNKNGDNFT EVSHLHELPV  120
LEQESELEPE TDHNMLNFSF SANPGGLGCS DTNAPQSINS TSLNHSDSVS SELKDSNKFI  180
RAAVKNRIRS ESCKSLLQKS KSCQLRSHIY PSDFSESETD QGLEKPKHKR LKALVTATSD  240
QAEGDGQQRM THIAVERNRR KQMNEHLAVL RSLMPGFYVQ RGDQASIIGG VIEFIKELQQ  300
LLQSLESQKQ RKTYCTEVQV LDPARVPGNP YRPKNIQSFM PCTSIDSNFE TVKELVANSK  360
SAVADVEVKI AGSNALLKTL SHKIPGQILK IVNALENLSL EILHLNISTI DDTVLNSLTL  420
KIGIECKLSV EELAQAVQQT FSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248259RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915684.18e-86transcription factor SPEECHLESS
TrEMBLD5ABX00.0D5ABX0_PICSI; Uncharacterized protein
STRINGXP_010266461.17e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.18e-51bHLH family protein