PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000038
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 24820.4 Da    PI: 9.5948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S15772621PU_unrefUnigeneView CDS
gnl|UG|Pta#S15774701PU_unrefUnigeneView CDS
gnl|UG|Pta#S25591493PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-8099PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-8217PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-8280PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-8572PU_refplantGDBView CDS
PUT-157a-Pinus_taeda-8607PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k i+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s
  Pta000038  9 KHIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKISEFAS 59
               689**********************************************86 PP
2K-box59.71.2e-20941741898
      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                + +l+ L+++++nL+++ R+++GedL+sLs keL++Le+qL  ++k+i +kK++++ ++ + l +k ++++ee+ +L++kl
  Pta000038  94 ESQLKALQERMDNLKKKERNMVGEDLQSLSGKELHRLENQLRIAIKRISDKKMKIFAQNAKSLAQKVRAMEEEKIELQSKL 174
                567899************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-30278IPR002100Transcription factor, MADS-box
CDDcd002654.87E-32271No hitNo description
PRINTSPR004047.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.19890180IPR002487Transcription factor, K-box
PfamPF014866.5E-1695174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGKTKMEMKH IQNPSRRQVT FSKRKNGLLK KAFELSVLCD AEVALIIFSE TGKISEFASH  60
NDMATILEKY RIYTETETDG NMGASSVQSV KVGESQLKAL QERMDNLKKK ERNMVGEDLQ  120
SLSGKELHRL ENQLRIAIKR ISDKKMKIFA QNAKSLAQKV RAMEEEKIEL QSKLRTRDDS  180
FSSTNLNLGS YTDRLSYNTM PSGLCDGNIN GDCFSSEIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20175174MEF2C
5f28_B7e-20175174MEF2C
5f28_C7e-20175174MEF2C
5f28_D7e-20175174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.135660.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7C91e-132A0A0K0M7C9_PINTB; MADS6 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.27e-40MIKC_MADS family protein