PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000084
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 290aa    MW: 31216.7 Da    PI: 7.345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S16801178PU_unrefUnigeneView CDS
gnl|UG|Pta#S25671840PU_unrefUnigeneView CDS
gnl|UG|Pta#S25798108PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-41155PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-7793PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-11557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT eE+  l  +v+++G g W tI +          R+  ++k++w++++
        Pta000084  5 KQKWTSEEEGALRAGVEKYGAGKWQTILKDPEfalclASRSNVDLKDKWRNLM 57
                     79*************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.237161IPR017930Myb domain
SuperFamilySSF466897.25E-16258IPR009057Homeodomain-like
SMARTSM007176.6E-6459IPR001005SANT/Myb domain
PfamPF002497.9E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-14557IPR009057Homeodomain-like
CDDcd116603.14E-21657No hitNo description
SMARTSM005262.4E-10120188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-13124195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-11124193IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.823125193IPR005818Linker histone H1/H5, domain H15
PfamPF005387.1E-8129191IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTS EEEGALRAGV EKYGAGKWQT ILKDPEFALC LASRSNVDLK DKWRNLMSVN  60
AGGQGSKTPR LKSIAAVPLS SVSPLSAAAP GAAMLIKSEA IIPSSTDIVT YSPKSTPASA  120
RNHSPRCDYD DMILEALTAL RDPNGIEANT IASFMEERHQ LPPSFRRTLG SKLKRLVSQE  180
KIIKIRNSYK LKDMAELRAA VSGPRNPTDA AMRLCYTAMD AASVETINQA SMAAAMKMAE  240
AEAMAAAAKE AAREAEYVAR LAEEADMFLE AASAVFEQFL PPYGEDGASL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.69510.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AA991e-154D5AA99_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-42telomere repeat binding factor 1