PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000087

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 276aa MW: 30190 Da PI: 5.9554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26629469	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-36323	PU_ref	plantGDB	View CDS
PUT-157a-Pinus_taeda-36324	PU_unref	plantGDB	View CDS
PUT-157a-Pinus_taeda-36326	PU_unref	plantGDB	View CDS
PUT-157a-Pinus_taeda-62982548	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153	1.3e-47	15	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kg 97 +GfrFhPtdeel+++yL+kkv+++ l++ ++i++vd y+++PwdLp+k+ +e+ewyfFs+rd++y++g r+nra+ sgyWkatg+d +++s + Pta000087 15 LVGFRFHPTDEELITHYLEKKVSSSALPA-SIIADVDPYQHDPWDLPAKALFGENEWYFFSRRDREYPSGARPNRAAGSGYWKATGSDIPIVSMsgstSP 113 68*************************.89***********8877899**********************************99555545 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk+ vfykg+ +g+ t+W+mhey l Pta000087 114 RKVGVKKSVVFYKGKGGEGVMTNWIMHEYCL 144 55*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-55	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	52.725	14	169	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	16	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEGVAFQQQA VPELLVGFRF HPTDEELITH YLEKKVSSSA LPASIIADVD PYQHDPWDLP 60 AKALFGENEW YFFSRRDREY PSGARPNRAA GSGYWKATGS DIPIVSMSGS TSPRKVGVKK 120 SVVFYKGKGG EGVMTNWIMH EYCLAQTLPT QKEGSVPLDG CVLCRLFQRL NHSPEMLSSS 180 QLEVPSPSAT DVQRTRQKPA MPKFSSFSRV LLNEVPSMEN LPSHATSDAN NAAVSSAESA 240 SSPQLDDWVL CRLLQTDSFS GDGLVLTAGG PVTVSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-58	17	169	23	168	NAC domain-containing protein 19
3swm_B	7e-58	17	169	23	168	NAC domain-containing protein 19
3swm_C	7e-58	17	169	23	168	NAC domain-containing protein 19
3swm_D	7e-58	17	169	23	168	NAC domain-containing protein 19
3swp_A	7e-58	17	169	23	168	NAC domain-containing protein 19
3swp_B	7e-58	17	169	23	168	NAC domain-containing protein 19
3swp_C	7e-58	17	169	23	168	NAC domain-containing protein 19
3swp_D	7e-58	17	169	23	168	NAC domain-containing protein 19
3ulx_A	8e-58	3	171	2	170	Stress-induced transcription factor NAC1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1296	0.0	cone\| embryo\| root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257164.1	5e-69	PREDICTED: NAC transcription factor 25-like
Swissprot	Q84TD6	2e-64	NAC47_ARATH; NAC transcription factor 47
Swissprot	Q8H4S4	4e-64	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	D5ABS0	1e-108	D5ABS0_PICSI; Uncharacterized protein
STRING	EOY28334	1e-66	(Theobroma cacao)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]