PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000246
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 667aa    MW: 72669 Da    PI: 6.3976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25560718PU_unrefUnigeneView CDS
gnl|UG|Pta#S25794388PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-24082548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32275331259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgsefprsYY+Ct+++Cp+kkk+ers  d++v+ei+Y+g Hnh+
  Pta000246 275 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCPTKKKIERSL-DGHVTEIVYKGLHNHT 331
                8****************************************.***************8 PP
2WRKY105.72.4e-33456514159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+
  Pta000246 456 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCSVRKHVERASHDPKAVITTYEGKHNHD 514
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27270333IPR003657WRKY domain
SuperFamilySSF1182901.7E-24273333IPR003657WRKY domain
SMARTSM007742.8E-34274332IPR003657WRKY domain
PfamPF031061.1E-23275330IPR003657WRKY domain
PROSITE profilePS5081122.481275333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37441516IPR003657WRKY domain
SuperFamilySSF1182903.01E-29448516IPR003657WRKY domain
PROSITE profilePS5081138.813451516IPR003657WRKY domain
SMARTSM007743.6E-39456515IPR003657WRKY domain
PfamPF031064.9E-26457514IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDYQQEQHPV TSSSHFYFPD QDLDMNSKSF SDLLADNNGD SLIWGANEQK LEFGAAGGLT  60
RGGNSFAERF AARGGEPLKL STAKFKTMSP SSLPIPRSPF LSIPPGLSPT TLLDSPVLLS  120
TAQDMESPTT GTFPLQSFSF QSTAATASLD IVKNEDGSCS SFAFKPLAGS NPSSDMQPLG  180
NLATFGYNHH QSLKGVQDDA RMWTSPIFSQ TNETNETGAN SSSEPTATGT TAMQAVPLQA  240
VRSQAASFEE QQQRPLSDFN QTAIVPPTGI ERPSDDGYNW RKYGQKHVKG SEFPRSYYKC  300
THPSCPTKKK IERSLDGHVT EIVYKGLHNH TKPQPSRRMG AAAAAAAAAA RLEEGESTEG  360
CGALVKVEDP SSTPPRRQNS NHLESLGTPE QSISASEEDD ARTQVDKFSG DEDLDEEESD  420
SKRRKKEVNT MDIIGATRTI REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY  480
KCTNAGCSVR KHVERASHDP KAVITTYEGK HNHDVPAPRN SSHTNAGLGS GQPPVPILQN  540
SVAPSTNGMA LTAPGTQETF SHFDRHPDLH NGYGNNNYMF GRIANESYNS QNGRGLGMSL  600
GAFGLESKHS EIQQAEAPTS FPMQIKPASH EYSSIGSGNS GHLYYNQPNE RDGLIRPKEE  660
QKGQFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38275517878Probable WRKY transcription factor 4
2lex_A4e-38275517878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270167.11e-134PREDICTED: probable WRKY transcription factor 20
TrEMBLA0A0D6QV381e-177A0A0D6QV38_ARACU; Uncharacterized protein
STRINGXP_010270167.11e-133(Nelumbo nucifera)