PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000403
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 419aa    MW: 47556.5 Da    PI: 7.5304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25554531PU_unrefUnigeneView CDS
gnl|UG|Pta#S25796851PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-39808PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.4e-52351621128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptd+elvv+yL++k+++ ++ +  +i+evd+yk++Pw+Lp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++k +++ 
  Pta000403  35 LPPGFRFFPTDDELVVHYLCRKAASLPIAV-PIIAEVDLYKFDPWELPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKgSNRR 133
                79*************************999.88***************8888899***************************************966778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfy g+apkg+kt+W+mheyrl
  Pta000403 134 VGIKKALVFYVGKAPKGNKTNWIMHEYRL 162
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-6430188IPR003441NAC domain
PROSITE profilePS5100561.24135188IPR003441NAC domain
PfamPF023653.5E-2636162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
RKELAFERAG NTVKGEIKIK LYNMGRQDAE AQLNLPPGFR FFPTDDELVV HYLCRKAASL  60
PIAVPIIAEV DLYKFDPWEL PEKALFGEKE WYFFTPRDRK YPNGSRPNRA AGSGYWKATG  120
ADKPITAKGS NRRVGIKKAL VFYVGKAPKG NKTNWIMHEY RLADVNRSAK KKGSLRLDDW  180
VLCRIYNKKS SAEKLAKEQE WSSEEAMEQF HEEIDQKVPG ILPTGDTIMN SNIEHSERTS  240
QDSTKSAPSP NCRTISKHDS RTSAITSMSY NSNPIFEQNL NISNASSAPM ELPELVPFFN  300
PMTNHRTNYD SADLIPPILL TDSSCSMQSS HDLKSDKEEV QSSCRLEELM QQQRQQQQEN  360
AGLNQSVFTF GFESLQNPFP QLDQIQPPSS NDPFQDYLPA SQLQATYRGL LFRGIESRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-88271947174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.81910.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NZG80.0A9NZG8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-93NAC family protein