PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000464
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 374aa    MW: 40826 Da    PI: 7.6448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S31823505PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-113382548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v+++G+++W++I++ ++ gR++k+c++rw + 
        Pta000464 16 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding55.11.7e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +++a++q+G++ W+tIar ++ gRt++ +k++w++ 
        Pta000464  70 PFTPSEDAAILQAHAQHGNK-WATIARALP-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8941166IPR017930Myb domain
SuperFamilySSF466891.46E-3113109IPR009057Homeodomain-like
SMARTSM007175.7E-161564IPR001005SANT/Myb domain
PfamPF002498.9E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241769IPR009057Homeodomain-like
CDDcd001674.93E-151860No hitNo description
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.2868117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370116IPR009057Homeodomain-like
CDDcd001671.43E-1270113No hitNo description
PfamPF002491.3E-1470112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAMSNGRLCE DLDRIKGPWS PEEDASLQRL VQKYGPRNWT LISKGIPGRS GKSCRLRWCN  60
QLSPQVEHRP FTPSEDAAIL QAHAQHGNKW ATIARALPGR TDNAIKNHWN STLRRRCRDP  120
EKGIVVHLDD EISSLDAARK RSSDGFSHDG SSALEDNGCS SWEVDSKRLK RLEELGTEQG  180
PEVEAEVEVS DRSDANPGRV LYRPVPVVSF FSSFGKTVAN LQETAAGAVG VDPPTSLSLS  240
LPGLDPAIPS PKLSTQKDSH NNSTVNNNIP IPPVVEYMRA DEAVVERLST AVKATVASML  300
TPVLNSSPRG YNPPAVSSDL LALMRDMVAK EVQKYMSSHH QPGMYTPLSP HPEFLGAANL  360
VRNVVLGGAL HLNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-39151163104C-Myb DNA-Binding Domain
1msf_C1e-39151163104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.72640.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362152.15e-82transcription factor MYB77-like
TrEMBLQ27IP00.0Q27IP0_PINTA; R2R3-MYB transcription factor MYB7
STRINGPP1S10_267V6.12e-81(Physcomitrella patens)
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]