PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000471

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 370aa MW: 39286.9 Da PI: 4.7143

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-74895	PU_ref	plantGDB	View CDS
PUT-157a-Pinus_taeda-74896	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.6e-05	344	364	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C++ F + s L++H Pta000471 344 HVCNTCSRNFATESALTQHNA 364 79*****************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.340	8.5E-4	26	119	IPR024057	Nucleoplasmin core domain
PROSITE profile	PS50157	10.907	344	370	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	346	367	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
TLSGLLGRAS SAISPAATNS SDQMEFWGVE VKPGEVQSCD PGDGKYLHLS QAALGEIQNA 60 KESERALLNV HVDNKKVVLG VLTYGKCDQF SLDIMFSKPF KLSHSCTTGS VFFIGYTTVV 120 EETDGGMKGY DDSDSDSDDD RQAQAMMHRV KENGQREAGP AKPELMKDGA KQVKPEPVII 180 DKAAAKAKPG ERKSLPGKTP VEKEESTDDD DEEDDGDGVD DESMEGSSDD EDESDEEEGD 240 SEDESDEDKN QKTPKVESSG KKRPLPDSSI KSPGTDKKAK VTPGGAQNQG TDGSKKGGGP 300 KTFVSKEQTP SNKGQTPKAK GAVAAKESPK PSTTPGSGKK FGQHVCNTCS RNFATESALT 360 QHNAAKHGGK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

TLSGLLGRAS SAISPAATNS SDQMEFWGVE VKPGEVQSCD PGDGKYLHLS QAALGEIQNA  60
KESERALLNV HVDNKKVVLG VLTYGKCDQF SLDIMFSKPF KLSHSCTTGS VFFIGYTTVV  120
EETDGGMKGY DDSDSDSDDD RQAQAMMHRV KENGQREAGP AKPELMKDGA KQVKPEPVII  180
DKAAAKAKPG ERKSLPGKTP VEKEESTDDD DEEDDGDGVD DESMEGSSDD EDESDEEEGD  240
SEDESDEDKN QKTPKVESSG KKRPLPDSSI KSPGTDKKAK VTPGGAQNQG TDGSKKGGGP  300
KTFVSKEQTP SNKGQTPKAK GAVAAKESPK PSTTPGSGKK FGQHVCNTCS RNFATESALT  360
QHNAAKHGGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P2L8	1e-178	A9P2L8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	8e-23	histone deacetylase 3