PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000511
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GATA
Protein Properties Length: 350aa    MW: 38759.6 Da    PI: 6.5699
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25088930PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-9567PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15277313135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +Cgt +  Tp++Rrgp g++tLCnaCGl ++ kg+
  Pta000511 277 CLHCGTGErsTPMMRRGPVGPRTLCNACGLVWANKGV 313
                99****9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.43134169IPR010399Tify domain
SMARTSM009795.9E-10134169IPR010399Tify domain
PfamPF062004.0E-12136168IPR010399Tify domain
PfamPF062033.2E-16202243IPR010402CCT domain
PROSITE profilePS5101713.106202244IPR010402CCT domain
PROSITE profilePS501149.262271327IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-12271324IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-12273326No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15276318IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.24E-14276319No hitNo description
PROSITE patternPS003440277304IPR000679Zinc finger, GATA-type
PfamPF003202.6E-13277313IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSDTDNLDPE SRVIHNNHQH HSFYPDRQAP IHAVNAHAHV AAHHAPMHGI LMQGQNEGDP  60
HRHQGAQFQG VDSGHMHIHY MHSDEHGHPL HHSNDNGAGE EQDEGDGDNN CMEEADVQSD  120
GDNLAEPQSV VPVRSQGTNQ LTLSYQGEVY VFDMVAPEKV QQVLLLLGGR EIPNSMAGMP  180
IATLHHQKGL SDVSHRLNQP QRLASLTRFR EKRKERCFDK KIRYTVRKEV AQRMQRNKGQ  240
FTSYKSDSKD LVSAGHKWDS AEGWAPNTNG TQQEAVCLHC GTGERSTPMM RRGPVGPRTL  300
CNACGLVWAN KGVLRDLSKS STSLGSQEQS QSSHEQNDGG PGSQETELGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.29100.0needle| root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845784.11e-102GATA transcription factor 24
RefseqXP_020523606.11e-102GATA transcription factor 24
SwissprotQ8H1G02e-81GAT28_ARATH; GATA transcription factor 28
TrEMBLD5AC320.0D5AC32_PICSI; Uncharacterized protein
STRINGERN074591e-101(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-80ZIM-like 1