PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000549
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 324aa    MW: 36749.7 Da    PI: 8.3497
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26631008PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-57196PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-52131401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv+yL+kkv +++l++  +i +vd+yk++PwdLp+k+  +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++  +++ 
  Pta000549  13 LPPGFRFFPTDEELVVHYLCKKVVSHPLPA-FIIGDVDLYKYDPWDLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITTCgGRKR 111
                79***************************9.67***************8888899*************************************99866777 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfykg+apkg+kt+W+mheyr+
  Pta000549 112 VGVKKALVFYKGKAPKGSKTNWIMHEYRM 140
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6310166IPR003441NAC domain
PROSITE profilePS5100561.43913166IPR003441NAC domain
PfamPF023651.0E-2614140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTQKGGTEGQ IDLPPGFRFF PTDEELVVHY LCKKVVSHPL PAFIIGDVDL YKYDPWDLPE  60
KALFGEKEWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPITTCGGRK RVGVKKALVF  120
YKGKAPKGSK TNWIMHEYRM AEINMAARKK NTLRLDDWVL CRIYNKKSSA ERLEEKKLAE  180
EMESCHDMQE TVGIHDMQET VEQQKKTQSV PSEPSPTDAS TVSAEAGLPS TNSSLFNPHL  240
PAPPMNPICQ HQSTTTDEVQ MNIKLANQLI QKQQQSGQCL NFNLGLDIVQ SPFFQLDNSE  300
PSSLFTHTRN SWTTTVYRDL IRLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-811017214171NO APICAL MERISTEM PROTEIN
1ut4_B5e-811017214171NO APICAL MERISTEM PROTEIN
1ut7_A5e-811017214171NO APICAL MERISTEM PROTEIN
1ut7_B5e-811017214171NO APICAL MERISTEM PROTEIN
3swm_A6e-811017217174NAC domain-containing protein 19
3swm_B6e-811017217174NAC domain-containing protein 19
3swm_C6e-811017217174NAC domain-containing protein 19
3swm_D6e-811017217174NAC domain-containing protein 19
3swp_A6e-811017217174NAC domain-containing protein 19
3swp_B6e-811017217174NAC domain-containing protein 19
3swp_C6e-811017217174NAC domain-containing protein 19
3swp_D6e-811017217174NAC domain-containing protein 19
4dul_A5e-811017214171NAC domain-containing protein 19
4dul_B5e-811017214171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.161360.0embryo| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.11e-93NAC domain-containing protein 68-like isoform X2
SwissprotQ52QH44e-87NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A3G2WJF91e-101A0A3G2WJF9_PICWI; NAC2
STRINGXP_008782755.13e-92(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-87NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]