PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000550
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 323aa    MW: 35684.2 Da    PI: 9.7758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26628827PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-6004PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.7e-1548135186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++  + +Liea   +  +l+rg+lk+++W++v++++       + +++ +qCk++++ l+k+yk +k +  +  ++  s++p+f++l+
  Pta000550  48 CWSEGATNTLIEAWGTRYVELNRGNLKQKHWKDVADAVsgreNCSKTSKTDVQCKNRLDTLKKKYKLEKSRIFS--NGGNSKWPFFNKLD 135
                7*************************************98777778889999******************9998..567779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2647137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATGAGVSVS VATTPAAAAN GIAETLVPST AGNGGGGGHG HGHGRDDCWS EGATNTLIEA  60
WGTRYVELNR GNLKQKHWKD VADAVSGREN CSKTSKTDVQ CKNRLDTLKK KYKLEKSRIF  120
SNGGNSKWPF FNKLDELIGP SRKHQHHHQQ AKPLAMVTPS GSKPIKRPPD EAPHMAMMPP  180
VAINSHHQHL HMTVAPNSAS SKSEETPDTT DSYPNGLDMA GNGKSNPFKK KKFLHDIGNN  240
NNDINNSNSS SPFKELTGAI LKFGEVYERV ESSKLQQFML LEKQRMEFIR DIEIQRMHLF  300
METQVELTKM KHGKHGNNTE HYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.146030.0embryo| root| shoot| xylem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024540996.15e-77trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-44ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D6QX651e-103A0A0D6QX65_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-42sequence-specific DNA binding transcription factors