PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000558

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 319aa MW: 34763.4 Da PI: 10.131

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S21718290	PU_unref	Unigene	View CDS
gnl\|UG\|Pta#S24122469	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-138882554	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.6	1.8e-14	86	171	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ +l+Li+a e+ +l+rg+lk+++W+ev++++ + ++ +qCk++++ l+k+yk ++ ++ s++++p++++++ Pta000558 86 WSQTATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVngrpGNNKQAKTDVQCKNRLDTLKKKYKVERSKIFSG---SVTKWPLYTKMD 171 ***********************************87776777788999**********999998886...7889*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-23	85	173	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDESNNARRH HHHSGGGAAE VVVGGNTGGG GGASNGLSLS LPLPPGSSSV KLNASPPPPP 60 LPPPQTAGEP AGGDRVAAGG GRDDIWSQTA TLTLIDAWGE RYLELNRGNL KQKHWKEVAE 120 AVNGRPGNNK QAKTDVQCKN RLDTLKKKYK VERSKIFSGS VTKWPLYTKM DELIGPARKH 180 HHHPQPLPLP PAPALRPRRH LIESSPNPLN TATSPDMTES CLNGFNGNPS SAKRRKTAAA 240 AVENPDGSPL KELAGAILKF GEVYERTEVV KHQQMMDLEK HRMEFAKDLE LQRMQLFVQT 300 QLELAKIKHA KHGNTEHYL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.6258	0.0	embryo\| root\| shoot\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024540996.1	4e-78	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	9e-38	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A9NWZ6	1e-161	A9NWZ6_PICSI; Uncharacterized protein
STRING	EFJ27884	1e-73	(Selaginella moellendorffii)