PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000625
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 279aa    MW: 30663.5 Da    PI: 8.8896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25800579PU_unrefUnigeneView CDS
gnl|UG|Pta#S26631000PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-9947PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08852345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+ e  +l+ +a +++  +   +W+ +a +++ g+t+ +++ ++ 
        Pta000625  8 SWSVEQNKLFENALAKFDIDtpdRWENVATCVP-GKTPAEVRRHYE 52
                     7*****************99*************.**********95 PP
2Myb_DNA-binding46.11.1e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Pta000625 114 PWTEEEHRLFLMGLNKYGKGDWRSISRNFVVSRTPTQVASHAQKY 158
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.453459IPR017884SANT domain
SMARTSM007179.5E-8557IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-12763IPR009057Homeodomain-like
CDDcd001679.56E-8855No hitNo description
PfamPF002499.3E-6852IPR001005SANT/Myb domain
PROSITE profilePS5129419.5107163IPR017930Myb domain
SuperFamilySSF466891.24E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18110161IPR006447Myb domain, plants
SMARTSM007171.2E-12111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12111157IPR009057Homeodomain-like
CDDcd001674.13E-11114159No hitNo description
PfamPF002492.4E-12114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKLEEDSSWS VEQNKLFENA LAKFDIDTPD RWENVATCVP GKTPAEVRRH YELLVEDVTV  60
IESGRVALPA YSENSYTPPE LMSDQLGDLT KQQAVSVKAP SAKASEQERK KGVPWTEEEH  120
RLFLMGLNKY GKGDWRSISR NFVVSRTPTQ VASHAQKYFL RLSSGNKEKK RSSIHDITSV  180
NGAEMKQPHL QQSSAITNSH NPSAVSRSSN MMYPSSLGGA TMVNSMGSPT GGNHMMLSPH  240
SLGPYSQKGI GGHSPGHIIP VSSLGVPQMG YPMQPSMHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-229711173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.161320.0embryo| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R2Q11e-133A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGPP1S256_11V6.15e-76(Physcomitrella patens)