PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000663

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 256aa MW: 28302.9 Da PI: 7.2668

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26638060	PU_unref	Unigene	View CDS
gnl\|UG\|Pta#S26638445	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-4529	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.8e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPk+++ m+v+gLtl+h+kSHLQkYRl Pta000663 29 KPRLRWTAELHERFVDAVTKLGGPDKATPKAVRTRMGVEGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.424	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-30	27	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-16	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-27	139	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MESHSERPVM LQEINVPTET GLVLSTDPKP RLRWTAELHE RFVDAVTKLG GPDKATPKAV 60 RTRMGVEGLT LYHLKSHLQK YRLGKQPHKE VNVDTSRDGS SHGGPVAGYG STACRVPEVQ 120 VACNSVSSII PANMTETLQI TEALRMQMEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE 180 KARETLAGYN VGSIGLEATR AELSELASKV KSECFNSTFS ALTFSTMPEI PGLFPESQIA 240 HQQSQAADCS AYSCLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018832813.1	4e-85	PREDICTED: myb-related protein 2-like
Refseq	XP_018832814.1	4e-85	PREDICTED: myb-related protein 2-like
Refseq	XP_018832815.1	4e-85	PREDICTED: myb-related protein 2-like
Swissprot	Q8LAJ7	2e-74	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	C0PPV3	4e-93	C0PPV3_PICSI; Uncharacterized protein
STRING	XP_010264109.1	3e-84	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	9e-77	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]