PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000696

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 239aa MW: 27049.7 Da PI: 8.2154

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26629965	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-52330	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.5e-09	20	87	2	68
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikege 68 W++ + +L+ +++ +++rg+l k++W ++++++ + + s +qCk kw+ l+k y k k + Pta000696 20 WPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLHG 87 9999999999999**********************88776377***************998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-9	20	100	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MALKRLETPK SSRAHKEALW PNTSIDVLLL KFEDTCFSVS RGRLGKTHWG RIADAVNAVC 60 SANYSGVQCK YKWNRLKKSY NKAKLHGETS RFVHYKRVER IVQKASGEKL HEDDEEEEEE 120 EEEMASEDDG VDSICEAAST ESKPSSVSMS ATEDDDVPRR PQKRGVTLKS FGNKMEQSMN 180 NLAQSMKNIE KTRTDKMMKL LDAQMEITSI LVQNNKRVSF GLSVLIVHCQ SLFVSLLGK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.17986	0.0	embryo\| needle\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNY6	1e-135	B8LNY6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-08	Trihelix family protein