PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000777
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 197aa    MW: 21451.7 Da    PI: 8.4716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26640627PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-50105PU_unrefplantGDBView CDS
PUT-157a-Pinus_taeda-72111PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-13103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Pta000777 103 PWTEEEHKMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 147
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.65141IPR017884SANT domain
SMARTSM0071749139IPR001005SANT/Myb domain
CDDcd001676.34E-41133No hitNo description
SuperFamilySSF466892.66E-51143IPR009057Homeodomain-like
PROSITE profilePS5129416.23295152IPR017930Myb domain
SuperFamilySSF466892.44E-1798153IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-18100150IPR006447Myb domain, plants
SMARTSM007177.6E-11100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11101146IPR009057Homeodomain-like
PfamPF002491.4E-11103147IPR001005SANT/Myb domain
CDDcd001676.79E-11103148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MALADHLEDT KDRWEKIALA VPGKSPAEVK RHYEILVEDI ASIEAGRVPI PCYVDEVAEQ  60
AADNGSAKKG GTHSSVYANL ASENNGTGKG SSKSDQERRK GIPWTEEEHK MFLLGLEKFG  120
KGDWRSISRN FVISRTPTQV ASHAQKYFIR LNSMNRDRRR SSIHDITSVN GSDVSSPQGP  180
ITGQGNQSSG SAGQSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-152532273RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.225330.0xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838124.18e-90transcription factor SRM1
SwissprotQ9FNN61e-79SRM1_ARATH; Transcription factor SRM1
TrEMBLB8LKB71e-130B8LKB7_PICSI; Uncharacterized protein
STRINGERN006933e-89(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-80MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]