PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000976
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 597aa    MW: 64445.4 Da    PI: 6.2018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25553230PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-18456PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.7e-30330388259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Pta000976 330 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSVLVTTYEGSHNHP 388
                7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-33314390IPR003657WRKY domain
SuperFamilySSF1182901.15E-27322390IPR003657WRKY domain
PROSITE profilePS5081129.539324390IPR003657WRKY domain
SMARTSM007741.1E-36329389IPR003657WRKY domain
PfamPF031062.3E-26331388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
XSVSQLEETE NEENFMTDRE SENEIKNGLV DFFSEKAVRG LGFEFRPSPG DGAPSVASLG  60
EGLRLGSQKT ENKEEGPSSS SSKGFNLSLL PANTGSDRST VEDGMSPVRS QEPSNPDEGE  120
PKSELMMLQV ELNRMNKENQ RLRLMLNYVS KNYGNLQMHL MSVMQQQPPP EKVEEKLNGS  180
SEGVKVDVAG PVQRQFLDLV PISSHGTDSQ HSLSSDTRDA DDVEETAKSI NNEVLSKKRD  240
VATANSTDKP RTCDVRVQQQ QQQPGTDPAA NSSTALNAQE KGHPDSPDHE SWTANKAQKV  300
ANKCAVDQTE ATIRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG  360
CPVRKQVQRC AEDRSVLVTT YEGSHNHPLP PAATAMASTT SAAACMLLSG STTSNDGGFN  420
SSFMQAAAGS LMSCSPASMA TISASAPFPT VTLDLTQNPN PNMYHRQPSG FPMPLGGFQQ  480
LPSHPPQIFS HSLFNTSKFA PLSGQQFDPQ QQQVPHFSGH PMQQQTHMPV PISQYKAPQS  540
SLMDTVSAIT TDPNFTAALA AAITSIISGQ SNNANTIPSQ APPCARADNP ASAKLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21316392176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.154420.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.11e-132PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A0C9QVA30.0A0A0C9QVA3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6922_2664 transcribed RNA sequence
STRINGXP_010252466.11e-131(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-88WRKY family protein