PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001083
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 532aa    MW: 58622 Da    PI: 5.599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20493115PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-41348PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-06282303223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  n + H+r H
  Pta001083 282 FCEICGKGFRRDANVRMHMRAH 303
                6*******************99 PP
2zf-C2H211.90.0007375396122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                y+C++C+k Fs   +Lk+H + 
  Pta001083 375 YTCHKCNKQFSVVGDLKTHGKH 396
                9******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.75E-6280303No hitNo description
PROSITE profilePS5015711.926281308IPR007087Zinc finger, C2H2
SMARTSM003550.011281303IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5283309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280283303IPR007087Zinc finger, C2H2
SMARTSM0035559337370IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.75E-6370394No hitNo description
SMARTSM0035518375399IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868375401IPR007087Zinc finger, C2H2
PROSITE patternPS000280377399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
XERRKDMPVD SARLLEIARM DSTRAGHQGF KTVDPRFDPE GRQEEGFFVE DSNPIGSAEY  60
HVGEGFRGQM QAFSDLQREE VAGNGGGQYF DWPLPASTLE GLLQGSSNNL SAWPAMAAIL  120
TSAAQAETST NVLLANLSVL QQKAQQLEAL VQEGRHDQPA SEVISSILSE LIVTAASVLF  180
SVQNREIAKP ASVDVQPVPD TAACVEIQAE NRTPPVGVGF GKSPNPNGAT DVGFEGGIDL  240
QEEKFVVDIK TGVEEETNSP DDRRYEIIEI NEDDILAEHT HFCEICGKGF RRDANVRMHM  300
RAHGDEYKTN QALMSRPPEQ GIKLPADSSS APKARRYSCP FERCRRNQNH LNFMPLKSIT  360
SLRNHYKRSH CPKMYTCHKC NKQFSVVGDL KTHGKHCGHN PWRCSCGTTF TRKDKLFGHV  420
ALFQGHKPLL PDQELARPPA PKRLKATSNG GATTAQSAGD DDDGSIAEFL TGDLSGLADN  480
KFQGYGTVDD DLFFAPKVSQ MGHRQNEVPI ESRFSESDFW ADFSGEFSDA CK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.134000.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9S20.0D5A9S2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-75C2H2 family protein