PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001276
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 476aa    MW: 53184.9 Da    PI: 6.0562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S23080992PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-12393PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.7e-141456648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
        Pta001276 14 PEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYL 56
                     8****************************************97 PP
2Myb_DNA-binding47.54e-1562107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
        Pta001276  62 RGNFSLKEEQTIIHLHQILGNR-WSAIASHLP-GRTDNEIKNVWNTHL 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.392456IPR017930Myb domain
SuperFamilySSF466891.05E-267103IPR009057Homeodomain-like
SMARTSM007176.5E-10858IPR001005SANT/Myb domain
PfamPF002491.0E-121356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211463IPR009057Homeodomain-like
CDDcd001677.33E-101456No hitNo description
PROSITE profilePS5129423.23357111IPR017930Myb domain
SMARTSM007178.9E-1461109IPR001005SANT/Myb domain
PfamPF002495.1E-1462107IPR001005SANT/Myb domain
CDDcd001673.37E-1064107No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2564111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
XPVINGIKKG TLAPEEDQIL ISYINKHGHG NWRALPKQAG LMRCGKSCRL RWTNYLRPDI  60
KRGNFSLKEE QTIIHLHQIL GNRWSAIASH LPGRTDNEIK NVWNTHLKKR LLQIGVDPVT  120
HAPRGYNVSN CYTAVNIRDH HGEQADHQLQ SHVCVSEPVK KTFQKEGNGI ESLVRQPLQE  180
AKAPQDHGAS SNSPVIHKTP DDQNMMSSDQ HEAYYSINSS GNNYTYSSDS SRVLSTKPME  240
LVSESPFGAC SATNKEQNNS GKVAAVMPYD YSKTSEKKML AVDYTSLLQS SYTDSLKFIL  300
DDDGEDSNSS EYHVNWKPLA GNQQNFVSLG SGEFREDDKP VVQQADPEVS VGYDSSMLNS  360
NVEFWRHELS LWPATESNTM GEPAVAYSSS NGAAPPVIGQ QKKVKVEPSG TNFSVEQFLE  420
LADHTMGTNM ECKSNIYDRW PDMNLADQDQ GMEYWVNLLR QVGPLPFLET IAPPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2391117108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.118410.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-66myb domain protein 74