PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001286
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 474aa    MW: 52029.2 Da    PI: 7.1808
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-32109PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-10186226545
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Pta001286 186 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 226
                788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-8182254IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415184228IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-6186229No hitNo description
CDDcd147083.04E-24186238No hitNo description
PfamPF001702.8E-7186226IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7187230No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
PfamPF141444.3E-33271346IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MANKIDEQVT AAASYVRSVS LGMQSFAPPL VSHTIGTFGT EASKGYFGEL EQTVGFHQDD  60
VAGLAGRSSA VNSRPAVNIN HSGALQIAGL AKVQQAPDFT PPSVNSVESR HHSSHRGGAQ  120
SGGFVSTTSG NRIDPWEDSL MADTSPRTDD TSTDVDTDEK MNQQMDLVRH GGDSSDRTKD  180
KNGDQKTLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFIGGSC  240
VGGDQSHSMS GNGALAFDME YARWLDEHHR QINELRSAVN SHVGDNELRV LVEGVMGHYD  300
EIFRLKTVAS KADVFHLVSG MWKTPAERCF MWMGGFRPSE LLKILVTHLE PLTEHQFMGI  360
NNLQHSSQQA EDALSQGMDA LQQSLAETLA SGSLGPPGTS GNVANYMGQM AMAMGKLGTL  420
EGFVHQADNL RQQTLQQMHR ILTTRQAARA LLAISDYFSR LRALSSLWLA RPRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.159770.0embryo| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826801.10.0transcription factor TGA2.3
RefseqXP_011621010.10.0transcription factor TGA2.3
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0D6QSB10.0A0A0D6QSB1_ARACU; Uncharacterized protein
STRINGERM940380.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-130TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]