PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001383
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 453aa    MW: 51464 Da    PI: 5.7528
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S31823503PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-16936PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ede+l+++++++G g+W+ ++++ g+ R++k+c++rw +yl
        Pta001383 18 RGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWINYL 65
                     788*******************************************97 PP
2Myb_DNA-binding50.83.8e-1671115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ E++l+++++++ G++ W+ Ia++++ gRt++++k++w+++
        Pta001383  71 RGNFSPNEEKLIIHLHTMVGNR-WAYIASHLP-GRTDNEIKNYWNSW 115
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-251068IPR009057Homeodomain-like
PROSITE profilePS5129423.881369IPR017930Myb domain
SuperFamilySSF466892.16E-2915112IPR009057Homeodomain-like
SMARTSM007175.2E-121767IPR001005SANT/Myb domain
PfamPF002493.2E-141865IPR001005SANT/Myb domain
CDDcd001678.98E-112165No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2469120IPR009057Homeodomain-like
PROSITE profilePS5129418.39970120IPR017930Myb domain
SMARTSM007173.1E-1370118IPR001005SANT/Myb domain
PfamPF002498.1E-1471115IPR001005SANT/Myb domain
CDDcd001673.82E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
VDIAMGRHLC CNQQKVKRGL WSPDEDEKLI NYITKYGYGC WSEVPEKSGL QRCGKSCRLR  60
WINYLRPDIR RGNFSPNEEK LIIHLHTMVG NRWAYIASHL PGRTDNEIKN YWNSWIKKKL  120
AKAEIISKNI EASKVHNNLP QFLFEESATL GNENKLLKSE MNTDGHAAPQ SHVLPSKETC  180
ETFPLWDYKM INHSTARNSQ YEMEDSKTAL TIDSLLIRTD SETGPIREFN TWDPSGILIN  240
SSSKNCKNSD FQYILQRDNG QQVQGLPVSN TWHGYSSLNP IEGSFYYNPN SESSNGVHTT  300
SSINESDFMR SLDMGPLIYS HHETLDPADH ANVATMWESG SSPNGVDLGY SECLYSGEQY  360
NHATENSCSY LPPLYDVSEE SAAIDIKHSG NNSLRYLEQI QSNEINISQE MDAIQQIFEQ  420
NSSLVTTIQY CLGSHSPVSD SHHLHHRPQD AFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25181207108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.48010.0shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ27IN80.0Q27IN8_PINTA; R2R3-MYB transcription factor MYB2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.18e-74myb domain protein 103
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]