PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001412
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 448aa    MW: 49515.8 Da    PI: 4.6816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21726895PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-52682550PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-20112160355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++aa++k++g
  Pta001412 112 YRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAAARKIRG 160
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.999111168IPR001471AP2/ERF domain
SMARTSM003806.0E-38111174IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22111169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-32111169IPR001471AP2/ERF domain
CDDcd000182.73E-19112167No hitNo description
PfamPF008476.5E-14112160IPR001471AP2/ERF domain
PRINTSPR003671.2E-11112123IPR001471AP2/ERF domain
PRINTSPR003671.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCGGAIISDF IIPPASRGRR VTARDIWPDF DKFSEFINGG AAVESFDVSV DVDDDEEDSD  60
DDEFLDFEES YQNKKKKQQQ PISPTKGFEL PLARGLDGPA AKSAVRKRKN LYRGIRQRPW  120
GKWAAEIRDP RKGARVWLGT FNTAEEAARA YDAAARKIRG KKAKVNFVDE PPPSVKKESN  180
NAKGSKKGSS KKIKSYTTPK ADFFEGFKTA KPSIAQYNFH QKFPNPSCDD LGYQNPLSPL  240
HAICNRNFVA KQSSSALPAY STEFSDFDDS EVDNLVPQPA SFEPMKNINK RKGYNSFESD  300
TSCVSADRSH ISWVTEVKTP EISSVPKAEA DSDQYDFADM STPVATSVSA GSPEVQLPPF  360
NNGLNKSPSV EDGVAVEKSP KLEESSQLEI SEDLPSLESY PWLFQMPYFE GLDQSLQGVG  420
IGDASFPDGE NDLQLWSFDA VPISDSAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21112167359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.2190.0embryo| needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NWS10.0A9NWS1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-23ethylene-responsive element binding protein