PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001414
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 447aa    MW: 49292.1 Da    PI: 6.1701
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25672734PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-104582554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.4e-10265323563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A+rs +RK  +i eLe+kv++L++e ++L  +l  l+  +  l++e+
  Pta001414 265 KRAKRILANRQSATRSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNEN 323
                9********************************************99998887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.6E-18261325IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932263326IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11265320No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-11265316No hitNo description
PfamPF001704.7E-9265321IPR004827Basic-leucine zipper domain
CDDcd147031.71E-24266315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDEHPIPSPR PPVSPFSADS HSRPDASRTG DVLPPRKGGH RRAHSEIPRQ VSWDRIGKGV  60
KKEAEWDRDG DLNMEVGDGE DLFSMYIDLD KLNTLNTTSS ANPADIGEGS GESGRKTLNA  120
DDDNEDDKAG QDDSGGNSVK EKDIDSGDDD AESESNEKKD GHKRSFPGGG YSTGRSHAAA  180
SHHHPHHVRS VSMDSVLSSF QNSENPNQKP SPSPTGRNIK HFHSNSMDGS MNFKLEFGNG  240
EFSGPELNKI MSNEKLAEIA MTDPKRAKRI LANRQSATRS KERKMRYISE LERKVQTLQT  300
EATTLSAQLT LLQRDSMGLT NENNELKLRL QAMDQQAQLR DALNEALSEE VQRLKLATGQ  360
SISMNSHLFQ LQQQGPHVAV HQLQQQQQQQ HQQQVTNSQQ SAGQQTNQNE VLQNTYGAFP  420
GSLSPFLKSD GSNIPASQGS XXXXXXX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.130540.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626470.11e-107probable transcription factor PosF21 isoform X2
TrEMBLB8LQ180.0B8LQ18_PICSI; Uncharacterized protein
STRINGERN144581e-106(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-65bZIP family protein