PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001455
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family E2F/DP
Protein Properties Length: 441aa    MW: 48355.1 Da    PI: 8.7319
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25804386PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-117982551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.29.1e-26171252371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   + +k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  Pta001455 171 GRGLRQFSMK---VSQKVESkGRTTYNEVADELVAEyanldstlvspdrqqyDEKNIRRRVYDALNVLMAMEIISK-EKKEIHWKG 252
                689*******...99999999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-43165257IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-30169252IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-20172253IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.7E-24172252IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144584.47E-39257360IPR014889Transcription factor DP, C-terminal
SMARTSM011384.3E-52259421IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.54E-37259364No hitNo description
PfamPF087811.1E-37260365IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLPRGSIRRA TGPRSGIRSR RTAANSVVSD SPYNNNNLRK DISIEFHEAS IHKYAEGFGI  60
TQNGANANGM NVDGNKSTLQ QGEGEYPSNA IAGRCSGTSA SAPGQSISVE SGSGGSLSRG  120
SEAAIATPSR NNQMARVQHL DIHQEDLDSP ETAGTRKRKR VPRVNGGEKG GRGLRQFSMK  180
VSQKVESKGR TTYNEVADEL VAEYANLDST LVSPDRQQYD EKNIRRRVYD ALNVLMAMEI  240
ISKEKKEIHW KGLPKTSIND VEQLKAEKLL LKSRIEKKAS YFHELEEQII GLQNLVKRNE  300
HRYSSGNTPS GGVSLPFILV QTHPRATVEI EISEDMQLVH FDFNSTPFGL HDDAYVLKEM  360
NFCKRPFSTG ADSGHEDCCN GTALAECKSP ESNVCQNLIP SHSPLPSVGA SYPMSSTPGR  420
TYSTPPVPGI LKARVKHENM T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-34163257193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.69650.0root| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.11e-145PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.11e-145PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-120DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D6QZS20.0A0A0D6QZS2_ARACU; Uncharacterized protein
STRINGXP_010241817.11e-144(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-118Transcription factor DP