PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001471
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 439aa    MW: 48417.1 Da    PI: 5.6675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20928501PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-38986PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19250300256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  Pta001471 250 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAFAYDTAAYQLRGE 300
                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.24E-32249309No hitNo description
PROSITE profilePS5103223.248250307IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-32250308IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-23250308IPR016177DNA-binding domain
SMARTSM003804.4E-35250313IPR001471AP2/ERF domain
PfamPF008479.3E-13251300IPR001471AP2/ERF domain
PRINTSPR003679.0E-11251262IPR001471AP2/ERF domain
PRINTSPR003679.0E-11273289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQSEFPSHVP SINGGAFFTD PVIYEELMKA VEPYAVRNSK PELFDNEDLV GVSGSSSCFS  60
WADQEQIQMR LRGSNSARNV PEMSACAPTI SGSWSELLMN GCNNAGDAAW YPSFQGSEAN  120
NQQQYAFVPD RAMDLGLQSM PSSQMGSSQL GVNSSQPLSI SEIYEQIQAN IQMQKKQQMD  180
HLQLQLLLAK SHHSQQVLGS SAYHYQQQQQ QLKQLRDLSL SRNLLGARAQ PMKLSAKNDS  240
KLGIARPAKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEEAAFAY DTAAYQLRGE  300
YARLNFPDLR YLLLSNSDNG SHNVLSPPGN ALSVLKSSVD AKLQAICQRL SQENSSENRL  360
MAHSANNEAL ENVKCEVSGS SNSSTICGAE SASTSPSKCE VDSSTLQKAP SFSIFAELDE  420
CLTKMPSLDP EVIEDVLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20249307160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.119270.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QV801e-130A0A0C9QV80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7287_2371 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.19e-33ERF family protein