PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001576
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 422aa    MW: 46026 Da    PI: 6.0911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20493971PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-29791PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-2169118255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa+a++aa+k+++g
  Pta001576  69 VYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDAAAKRIRG 118
                69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1469118IPR001471AP2/ERF domain
SMARTSM003801.9E-3769132IPR001471AP2/ERF domain
PROSITE profilePS5103224.09269126IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2269127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-3269127IPR001471AP2/ERF domain
CDDcd000181.36E-2070128No hitNo description
PRINTSPR003671.4E-117081IPR001471AP2/ERF domain
PRINTSPR003671.4E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAEQXQETFN KPGKLDEGYK QKSKPSKGFV KTQQEFCSGF EGGRSEVIPP LEDVEGSAPT  60
IGGRKRKNVY RGIRQRPWGK WAAEIRDPSK GVRVWLGTFN TAEEAARAYD AAAKRIRGKK  120
AKLNFADNSC SVKNDTSKKV SGKKGKLCSK HPALLLEGFN ASCKVKPSYS ANPDLLGGYN  180
INRKVKASLS GVGKSDLTIC GYDDMEYGDS EFSKPSAPFQ NNSNACTVQF SEHSNLAQTS  240
QKSCSCEICS HNYSEMSNVM PPAYINAVNF EPVQTSNPGG YFDSDHSSMS FEGAHFPWAQ  300
EIKTPEVSSI CDDANESAFV DIKPVDNVVK AKPVDTPIEV DGGTDDCYKT QDGDGQFDKQ  360
LSALESYLGL SENSIAKANL CIEGAGRSAG SFPDEQCFLE QWFLDDLPNS GLRYPSSLGS  420
RI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2370125359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.110900.0root| shoot| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-22ERF family protein