PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001609
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 416aa    MW: 47343.4 Da    PI: 6.3959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20925795PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-19521PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++++ +G g+W++ +++ g++R++k+c++rw++yl
        Pta001609 14 KGAWSAEEDSLLGKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.78.6e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ Tt+E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++ 
        Pta001609  67 RGNITTDEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNTN 111
                      7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.698961IPR017930Myb domain
SuperFamilySSF466893.56E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002497.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-221568IPR009057Homeodomain-like
CDDcd001676.48E-91661No hitNo description
PROSITE profilePS5129423.35362116IPR017930Myb domain
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PfamPF002498.6E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2269116IPR009057Homeodomain-like
CDDcd001677.61E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRAPCCTKV GLNKGAWSAE EDSLLGKYIQ THGEGNWRSL PKKAGLRRCG KSCRLRWLNY  60
LRPCIKRGNI TTDEEELIIR MHALLGNRWS IIAGRVPGRT DNEIKNYWNT NLSKKLAVRG  120
IDPKTHKKIT TDGTNRVNGD RFNQRKGEKI YDSPQKPRQP ERNVARAAQS TGVVIPNVHN  180
LKADLKAQYI ARIREFKSSN AISSSSRLNA QIEPKSRELS TEDPIFRCSS ASEKTRETTH  240
PDFMEPHPVA SSDAGKQTND STVYCSSDSA ASCSLIEHFS SEDDHHYLSM EGNSNECYSQ  300
TLAEDYGSLK PSTPHTESEP ICDSRERDND SHVQKHDQFP EYDVFSFFDV RNAENEICCS  360
ADQWVHEQEA EFMQQKDQEM AQLGSWEKQI DDQEKENFES HVNNDVTAMS WEASFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.187860.0needle| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U9VW600.0A0A1U9VW60_PINRA; MYB transcription factor MYB2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-66myb domain protein 3