PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001671
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 408aa    MW: 42307.1 Da    PI: 6.7225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21051653PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-75826PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06149171527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +Cr++     C+yG +C++ Hgp
  Pta001671 149 ECRRYKTDEGCPYGLTCRYKHGP 171
                6********************96 PP
2zf-CCCH291.9e-09252278127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC++f     C++Gd+C+FaHg+
  Pta001671 252 YKTRLCNRFNTDPGCRFGDKCHFAHGE 278
                9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8146171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.028149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5150175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.141185213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-7186210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6186211IPR000571Zinc finger, CCCH-type
SMARTSM003561.1187212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8250282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-14251283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784251279IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4251278IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6252278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MESFEPTLKK SRGYDTDGAN GMPWTSSSSA GNMNMNPGMN LSSGVNYHSG PNPNQGHGFN  60
PNAAGANPNP NPTLNPNSGV NEVMQGPPQG GYPPAMGGGQ YAGGSGASYG GGSYGGGSYE  120
NGNHSTHFEV LGFQQQHQQG SNVNVGDLEC RRYKTDEGCP YGLTCRYKHG PTDERDFNIH  180
VPSSGGKSKP CMKFFSTSGC PYGEGCHFSH YVVGGIAALG LAPVQTMPAA TMAPPRKQPG  240
PIGDPSATVS GYKTRLCNRF NTDPGCRFGD KCHFAHGESD LRSSNNISAS NRNGVPMQSA  300
PAIYDNGPLA TVSNPAGFVD ATAYGNSAST ATYGNSASTA AYGNSVVYSA NTFPSSQSYA  360
EPTPPGVAAN TPFVPNYNMP VENSSQLPGV EGTMQGGPVT GTNNVQVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104117SGASYGGGSYGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.35620.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247477.11e-65PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0C9RL801e-113A0A0C9RL80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12684_1767 transcribed RNA sequence
STRINGXP_010247477.15e-65(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-11C3H family protein