PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001770
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 395aa    MW: 43545.1 Da    PI: 4.62
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25091195PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-24682547PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20183232255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Pta001770 183 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAMAYDKAAYRLRG 232
                59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-33182242No hitNo description
SuperFamilySSF541714.45E-23183241IPR016177DNA-binding domain
PROSITE profilePS5103223.314183240IPR001471AP2/ERF domain
SMARTSM003802.4E-37183246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32183241IPR001471AP2/ERF domain
PfamPF008474.0E-14184232IPR001471AP2/ERF domain
PRINTSPR003673.5E-11184195IPR001471AP2/ERF domain
PRINTSPR003673.5E-11206222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDLITDPQNS EGPDRQGFRF PSLVSNQNLG VFNASVQDVF EDSASSSSSP SNGDARLEGL  60
DAWQNLRMPE ASLVSGNSEV LCSSSSFFPN LPSNGFGHSD GLVWRPSFQG QNQYSGESIE  120
SAMVLYELLH VQQIQQIQQQ QFQLQQQQIA AAASIHHMGR NPLGPRAQPM KLHGSSLSKP  180
AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA MAYDKAAYRL RGDYARLNFP  240
HLKHHLEANS FAPWTGNSVL PSSVDAKLQA ICQSLKQPLE SMSKTEESEE ISCAYENSGS  300
LGSVRDEDAK KNDVVSVKSE TCDSDSSDDS TITALNSAGE SESRSASKLE TQAETETDTL  360
CSMPSFSASS IWAELDDYLL SIPPLDMDIN WDVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21182240160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.122600.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621406.11e-59ethylene-responsive transcription factor ERF060
TrEMBLA9NUH30.0A9NUH3_PICSI; Uncharacterized protein
STRINGERM942008e-60(Amborella trichopoda)