PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001860
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 384aa    MW: 41472.8 Da    PI: 4.4617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25590386PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-23601PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.3e-30166224259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D+++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers +dp+++++tY+++Hnh+
  Pta001860 166 SDKWAWRKYGQKPIKGSPYPRGYYRCSSSkGCCARKQVERSCTDPSMLIVTYTSDHNHP 224
                69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30160226IPR003657WRKY domain
SuperFamilySSF1182901.28E-25163226IPR003657WRKY domain
SMARTSM007743.3E-34165225IPR003657WRKY domain
PROSITE profilePS5081131.651166226IPR003657WRKY domain
PfamPF031064.8E-25167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAFLDAASTP ALMSFDPGSA DADASVFYPL RRCAATCLGG VAALYPEKQE NSCNQRNEGE  60
FTFGTSIVKQ ELEDQLDFVQ PASFVYSSEL VEALQASSSL GEETHNKSCD LPGSPVKRDS  120
PERSTGEDCD VKAAPCSKRR KTVEKKVVCV PVGPADGRQK NDGPPSDKWA WRKYGQKPIK  180
GSPYPRGYYR CSSSKGCCAR KQVERSCTDP SMLIVTYTSD HNHPWPANRA NSNSNAGLPA  240
KQSQSQLGVA PIVSEKSSNI SQEVASTPEE AVACINSSDN LFSLIINSPG RLEQRVVSSI  300
EIQEDEPLAF VQDVAELCIS GSNNLDDDDD FYADLGELPD SSAIFSTRGS IFEDDENRNS  360
GGIDRLSFFS WSGSCGILGN NAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-20145226679Disease resistance protein RRS1
5w3x_D3e-20145226679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.178120.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4G31e-122A0A0D6R4G3_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-47WRKY DNA-binding protein 65