PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001942

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB

Protein Properties

Length: 375aa MW: 41096.6 Da PI: 7.4658

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25556082	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-40136	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.6	1e-11	2	34	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++v++lG+++W++I++ ++ gR++k+c++rw + Pta001942 2 KLVEKLGPRNWSLISKGIP-GRSGKSCRLRWCNQ 34 79***************.*********985 PP
2	Myb_DNA-binding	53.3	6.3e-17	43	85	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd + +a+ ++G++ W+tIar ++ gRt++ +k++w++ Pta001942 43 PFSPEEDRMIMEAHSMHGNK-WATIARILP-GRTDNAIKNHWNST 85 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.11	1	37	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.503	1	35	IPR017930	Myb domain
CDD	cd00167	3.95E-9	2	33	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-17	2	42	IPR009057	Homeodomain-like
Pfam	PF00249	7.2E-11	2	34	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.18E-26	14	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.092	36	90	IPR017930	Myb domain
SMART	SM00717	1.1E-14	40	88	IPR001005	SANT/Myb domain
CDD	cd00167	5.50E-12	43	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-23	43	89	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-14	43	85	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
XKLVEKLGPR NWSLISKGIP GRSGKSCRLR WCNQLSPQVQ HRPFSPEEDR MIMEAHSMHG 60 NKWATIARIL PGRTDNAIKN HWNSTLRRKC LAEKDSSGGG PPSTSAPVPT FAMGGEKRSS 120 ADLLSNDDGG SAQEDQDQDQ DQDQDQDGNM EVESQRFKRR LNYSPESPAN SHTNTNTTNS 180 PPVSTAQQQI HRPLPLQSAF KSYSNNLDPP TLLSLSLPGS GMKEEDSKTD DRNQNSAPKN 240 QLQQNVELNG FAGTQTQTQQ LQYTFIPPYF QQPVMTPTST NGYLKTDDAM VMMSEAVKMA 300 VGQAVSLVFQ ASQAQCGSLG AVERSGVSAS GGLLDIMREM IAKEVKNYMA MSQPNQCNQT 360 GGLNCAMDSS LPRKV

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

XKLVEKLGPR NWSLISKGIP GRSGKSCRLR WCNQLSPQVQ HRPFSPEEDR MIMEAHSMHG  60
NKWATIARIL PGRTDNAIKN HWNSTLRRKC LAEKDSSGGG PPSTSAPVPT FAMGGEKRSS  120
ADLLSNDDGG SAQEDQDQDQ DQDQDQDGNM EVESQRFKRR LNYSPESPAN SHTNTNTTNS  180
PPVSTAQQQI HRPLPLQSAF KSYSNNLDPP TLLSLSLPGS GMKEEDSKTD DRNQNSAPKN  240
QLQQNVELNG FAGTQTQTQQ LQYTFIPPYF QQPVMTPTST NGYLKTDDAM VMMSEAVKMA  300
VGQAVSLVFQ ASQAQCGSLG AVERSGVSAS GGLLDIMREM IAKEVKNYMA MSQPNQCNQT  360
GGLNCAMDSS LPRKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-34	2	89	17	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-33	2	90	71	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-33	2	90	71	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-34	2	89	17	104	C-Myb DNA-Binding Domain
1msf_C	4e-34	2	89	17	104	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.21637	0.0	shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A222UAA8	1e-133	A0A222UAA8_GINBI; R2R3MYB7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-49	myb domain protein 77