PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001992

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C2H2

Protein Properties

Length: 370aa MW: 40450.5 Da PI: 7.203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-60706	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H Pta001992 165 FPCNFCQRKFYSSQALGGHQNAH 187 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-6	162	192	No hit	No description
PROSITE profile	PS50157	11.094	165	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
XSRSVMIMTS SSIDLDGESY ISQESVISNQ ILQSNISSQK DSIEGSSVNT PHMFFDTQNN 60 LCKAKQKVSS SGNLEKNSKI SLELSLGGGD LNDLQTCDLK NHFGLHSDKF NKESSCIAAE 120 TSDHVKKASE WGESVVSTSE NSNDLDPPTY SETSSPAQGS DPRVFPCNFC QRKFYSSQAL 180 GGHQNAHKRE RTLARRAQRM GSFAQRYSSM ASLPLHGSSE TSWTPSRFLG IKAHSLIHKP 240 FPEGDNLPQG HHGWSMVRFM ENQISGKHAA DELSSRAISR GVARFDNNYF GLAVGGRVLG 300 GPPVFLEEGP NFSWPGSFRS QKGEAGHIFQ PKQNLSAHDN SNGITLQNYV ADTAPLSCKD 360 ISSPDLTLRL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

XSRSVMIMTS SSIDLDGESY ISQESVISNQ ILQSNISSQK DSIEGSSVNT PHMFFDTQNN  60
LCKAKQKVSS SGNLEKNSKI SLELSLGGGD LNDLQTCDLK NHFGLHSDKF NKESSCIAAE  120
TSDHVKKASE WGESVVSTSE NSNDLDPPTY SETSSPAQGS DPRVFPCNFC QRKFYSSQAL  180
GGHQNAHKRE RTLARRAQRM GSFAQRYSSM ASLPLHGSSE TSWTPSRFLG IKAHSLIHKP  240
FPEGDNLPQG HHGWSMVRFM ENQISGKHAA DELSSRAISR GVARFDNNYF GLAVGGRVLG  300
GPPVFLEEGP NFSWPGSFRS QKGEAGHIFQ PKQNLSAHDN SNGITLQNYV ADTAPLSCKD  360
ISSPDLTLRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.17073	0.0	root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	4e-30	zinc finger protein 4