PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta002025

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

SBP

Protein Properties

Length: 367aa MW: 39300.1 Da PI: 6.628

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25634768	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-76333	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	41.3	4.2e-13	10	39	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 f sefDe+krsCrrrLa+hnerrrk+q+ Pta002025 10 FIFXSEFDEGKRSCRRRLAGHNERRRKPQP 39 66679**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.597	1	37	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.55E-10	10	42	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.9E-6	14	36	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
SDSASNVAGF IFXSEFDEGK RSCRRRLAGH NERRRKPQPD SLAINPARFA SAFYDDRGLN 60 SILMDRSPFM HQRITSNSIL EDSIDFKLGG YGKGAWPRVK AEDESSYDGQ VSAGTVSHHN 120 ADRLLFFLQS SKTVPGGPIS QDVHQYMQSS GAHAGQALTL SSSSGENLAG LDVVSATHGL 180 SGVSDSGCAL SLLSFQSGGS RASGSASFDM TTRSGLTMDQ LIQGDQPLMA QPLMQGVQHN 240 FGLFGADKLL TVCSQSSTNL ATGGFPATVV NSMDKQHQGE PLVSNAGGIG NFGGHVFGLL 300 QGSNFRASQA ASSQDIQGTI DLMRRSSETQ NDSHDQHGMV HQGRRQFTDA QLLRSFESSI 360 YDTHQLL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

SDSASNVAGF IFXSEFDEGK RSCRRRLAGH NERRRKPQPD SLAINPARFA SAFYDDRGLN  60
SILMDRSPFM HQRITSNSIL EDSIDFKLGG YGKGAWPRVK AEDESSYDGQ VSAGTVSHHN  120
ADRLLFFLQS SKTVPGGPIS QDVHQYMQSS GAHAGQALTL SSSSGENLAG LDVVSATHGL  180
SGVSDSGCAL SLLSFQSGGS RASGSASFDM TTRSGLTMDQ LIQGDQPLMA QPLMQGVQHN  240
FGLFGADKLL TVCSQSSTNL ATGGFPATVV NSMDKQHQGE PLVSNAGGIG NFGGHVFGLL  300
QGSNFRASQA ASSQDIQGTI DLMRRSSETQ NDSHDQHGMV HQGRRQFTDA QLLRSFESSI  360
YDTHQLL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13808	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K0M756	0.0	A0A0K0M756_PINTB; SPL1