PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002030
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 366aa    MW: 40489.8 Da    PI: 5.9967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S16797011PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-33002PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-15146448
                     S-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     W++eEd  l+++++++G+g +W + ++++g++R++k+c++rw++yl
        Pta002030  1 WSPEEDSELKKYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 46
                     ********************************************97 PP
2Myb_DNA-binding361.6e-115395246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        Pta002030 53 GGFSEEEDNIICTLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 95
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002498.6E-14146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-23153IPR009057Homeodomain-like
PROSITE profilePS5129413.147146IPR017930Myb domain
SuperFamilySSF466892.88E-24193IPR009057Homeodomain-like
SMARTSM007171.3E-7148IPR001005SANT/Myb domain
CDDcd001674.46E-10146No hitNo description
PROSITE profilePS5129421.2147101IPR017930Myb domain
SMARTSM007171.3E-105199IPR001005SANT/Myb domain
PfamPF002493.1E-105395IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2354101IPR009057Homeodomain-like
CDDcd001671.28E-75595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
WSPEEDSELK KYIEKYGTGG NWIALPQKIG LKRCGKSCRL RWLNYLRPNI KHGGFSEEED  60
NIICTLYLSI GSRWSIIAAQ LPGRTDNDIK NYWNTRLKKK LLGKTKERQS RRLAGAKEES  120
KDMQSYATPG TSTNPNIYAP QQQPGGLDKH TDINMNGPYS NLGSGINPQL FDQTITEPSS  180
SSGPATFQLN CQHVQLDQEL GDHNSCLTKL LQGLEGTVVD HHNSSNITMM STSSSMQASD  240
CINSSELMHS IAYNQYNSDA ASHASYETAA SSVFISGEHI LENQRKLENP SAAFAQNENS  300
LFFPASRSPH GGDYESAWMD TFSVENNALG ASGFATGLND LLLYNNISTV QQREACNYDF  360
GSISIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23110110108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.159510.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-135D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-62myb domain protein 84