PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002120
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family CO-like
Protein Properties Length: 358aa    MW: 38470.5 Da    PI: 4.9014
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26630128PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-24502PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07344439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
               + C+ +    ++l+C+ +  +lC  C ++ H g       H++
  Pta002120  3 KPCNVCRIASASLYCRADAAYLCSGCDVKVH-GanklasrHER 44
               67******99*********************.54677777775 PP
2zf-B_box26.71.2e-084590342
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                + C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Pta002120 45 VWLCEVCEQAPAAVTCKADAASLCVSCDADIHSAnplarrHERVPI 90
               689*****************************66899999*99997 PP
3CCT691.2e-23294337144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRYkeKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pta002120 294 REARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 337
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
PfamPF006437.6E-6344IPR000315B-box-type zinc finger
CDDcd000212.76E-6447No hitNo description
PROSITE profilePS5011910.7364390IPR000315B-box-type zinc finger
PfamPF006438.0E-74590IPR000315B-box-type zinc finger
CDDcd000215.34E-94690No hitNo description
SMARTSM003362.8E-104890IPR000315B-box-type zinc finger
PfamPF062031.1E-17294336IPR010402CCT domain
PROSITE profilePS5101716.648294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
XPKPCNVCRI ASASLYCRAD AAYLCSGCDV KVHGANKLAS RHERVWLCEV CEQAPAAVTC  60
KADAASLCVS CDADIHSANP LARRHERVPI VPFYECVSVA KAFLPPLPQT SSLQDSDAPG  120
TLDYDDDDED DEIYAAEAAS WLLPNPKASA EGTKNCDDGV SCFGVDAGPN KAAGGYFSVV  180
DLFSDVDPYL DLDYASSFEA TGGTDSVVPV QSNGSSHDGA VSTPSDCFET DKAVYSYTTT  240
TSFSHSVSSS SLDVGVVPDA MLSDISRPLN GGAALELANP GAVHVGVQYV QADREARVLR  300
YKEKRKNRRF EKTIRYASRK AYAETRPRIK GRFAKRTNAD VVQMYTSAEF GYGLVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.130840.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259762.11e-105PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ940T97e-91COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A3G2C0P70.0A0A3G2C0P7_9SPER; CONSTANS-like protein
STRINGXP_010259762.11e-104(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-90CONSTANS-like 4