PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002126
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 358aa    MW: 40685.6 Da    PI: 6.1259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26643278PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-80958PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
        Pta002126 14 RGAWTKREDMILSEYIRIHGDGGWRNMPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding54.42.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++++
        Pta002126  67 RGNISPDEEELIIRLHHLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129413.742961IPR017930Myb domain
SuperFamilySSF466893.33E-2712108IPR009057Homeodomain-like
SMARTSM007176.7E-121363IPR001005SANT/Myb domain
PfamPF002493.2E-131461IPR001005SANT/Myb domain
CDDcd001675.89E-91661No hitNo description
PROSITE profilePS5129426.46162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007173.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567111IPR001005SANT/Myb domain
CDDcd001676.78E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTKR EDMILSEYIR IHGDGGWRNM PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHHLLGNRWS LIAGRLPGRT DNEIKNYWNT HMSKKLLPLN  120
ESQPKTLPVP KRRPQSPSPL QNRVFKANPV KITTVVSPSD IGRPKGYSNR RPDETMNSSK  180
SRYQLLVNDS DSITGSESKP IPSANADNHV ATEAAMSSLA DQQSLEPNHF YAAAMADSLL  240
YLNELSSPDS DLLSYPSNCS TDFGLEEFYS VPTTETNGFE DMCSDQRNME RVDNSTVAEK  300
QVMEEIFHNT ERLDWIHEID YLQKSSSQQL SFLLLEAEDE WEERATGKAV PENSEQIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.153380.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024165025.15e-74transcription factor MYB8-like
TrEMBLA0A167V9010.0A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-58myb domain protein 3