PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002132
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Dof
Protein Properties Length: 357aa    MW: 39244.8 Da    PI: 5.674
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25131051PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-49007PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.25.1e-4049109262
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                +e+alkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+++
  Pta002132  49 TEQALKCPRCDSTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRAK 109
                6899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2847107IPR003851Zinc finger, Dof-type
PfamPF027018.8E-3451107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.99153107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVLSSVEVCM DSADWTQSFL QNSALKLPED LMPCPRAPPM MERRIKPQTE QALKCPRCDS  60
TNTKFCYYNN YNLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRAKR AVDHPVSAQN  120
EASTSAAPGN EVPDRSPFEP PSSKSIYYGG ENMNLTGLPF SRIQQDRAAL AHCNSSSFLG  180
MSCGTQSASL EPHLSALNTF NSFKSNNPGL DFPSLSTDQN SLFETSQPQL SRAMGSALFS  240
MPMAPGLDDP ADFHWKLQQQ QQKLSFPFGD GQIENGPGSE GHDFLTYEDS SKDDQKPEVV  300
TKLPSSSVKV EEDQNALATD WQVPASEPLF AGDSNSYWNG GSWPDIASYG LSVCPLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.129570.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT2B8A70.0T2B8A7_PINPS; Dof2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.17e-36DNA binding with one finger 2.4