PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002175
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 353aa    MW: 39053.1 Da    PI: 9.9844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26637442PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-23819PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.6e-32283340359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp+++++tYegeHnh+
  Pta002175 283 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDPSMLIVTYEGEHNHS 340
                99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-19235279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-33269340IPR003657WRKY domain
PROSITE profilePS5081130.01276342IPR003657WRKY domain
SuperFamilySSF1182909.42E-27279340IPR003657WRKY domain
SMARTSM007743.0E-39281341IPR003657WRKY domain
PfamPF031062.5E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDPVNISLSL NIQRDRDVQI MSRAGLDSAQ RMVSILSQKH QQNQQEQVQQ EFGLAAEDAL  60
SKLNKVVSLL SRKGHARVRR GPLQTQSASG SGSEQLFMDG PNFLDLESPK THASASIYSS  120
SSSDFALSQC VKQFLPCQSS SSGVLSADTN RHQQLHPQMH YPPLQLQHLS PQAEVMFRNG  180
YMQLDNSMSC TATISSTKSF MSSLSMDGSI ANDKQLLQYQ SISASQERIP GASSKRKCSG  240
KGDDSSKCGS TGRCHCSKRR KLRVKRTIRV PAISSKLADI PPDEFSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RSLEDPSMLI VTYEGEHNHS RLLSSNSSLI VHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21269339271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.116170.0root| shoot| xylem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235315.11e-88PREDICTED: probable WRKY transcription factor 21
SwissprotO043365e-73WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3G6JAH20.0A0A3G6JAH2_PINTA; WRKY DNA-binding protein 21
STRINGXP_008235315.15e-88(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-52WRKY DNA-binding protein 21