PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002197
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 352aa    MW: 38069.9 Da    PI: 8.8225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24111735PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-62208PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171560147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l + v+++G+++W++I++ ++ gR++k+c++rw + 
        Pta002197 15 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60
                     79******************************.***********985 PP
2Myb_DNA-binding58.41.6e-1869111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd  +v+a++q+G++ W+tIar++  gRt++ +k++w++ 
        Pta002197  69 PFTPEEDATIVRAHAQHGNK-WATIARMLS-GRTDNAIKNHWNST 111
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.8711065IPR017930Myb domain
SuperFamilySSF466891.97E-3212108IPR009057Homeodomain-like
SMARTSM007172.3E-161463IPR001005SANT/Myb domain
PfamPF002491.7E-171560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251668IPR009057Homeodomain-like
CDDcd001672.22E-151759No hitNo description
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129421.11467116IPR017930Myb domain
PfamPF002492.5E-1569111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2369115IPR009057Homeodomain-like
CDDcd001671.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKGKSPGHDE PDRIKGPWSP EEDAALQHFV QKYGPRNWSL ISKAIPGRSG KSCRLRWCNQ  60
LSPQVEHRPF TPEEDATIVR AHAQHGNKWA TIARMLSGRT DNAIKNHWNS TLRRRCQGGG  120
ALVIDDEISS GADGFRKRNL SEDADASRKF KKLSLGTTTT TTTTEPSTSS ASDRSDSSLV  180
FGSPHVYKPV PRPAPLALTS EPNLNLNHHE ASCSSTDPPT SLCLSLPGTD APARPSVVPI  240
ALPSPVTSSP VAPPGYIKAE EAMEWMNSAI NTTLTQVLTP FLAPARSHGI MPETLGSSGL  300
LAVMQEMVAK EVRDYMSSMQ HRNNNNTEFR GCVASPPPPP MGLRVSNSNA LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-391111654159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-391111654159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.176390.0embryo| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285015.16e-88PREDICTED: transcription factor MYB44
TrEMBLA5JYF00.0A5JYF0_PICGL; R2R3-MYB transcription factor MYB6
STRINGVIT_18s0001g09850.t012e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-72myb domain protein 73