PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002210
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HSF
Protein Properties Length: 351aa    MW: 40018.8 Da    PI: 5.2775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25802734PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-66100PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35391312103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+ye+++d++++ ++ ws+ +nsf+v+++++f++++Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
     Pta002210  39 FIMKTYEMVDDPSTDVVVAWSAGNNSFIVKNPHQFSQHLLPRYFKHCNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLSTIH 126
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk +
     Pta002210 127 RKKAT 131
                   **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5635128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3737128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3337128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-183962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3039128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
EAESYRAEDR IIIKIHMKSE FNIHSRRNMD SAISCSTPFI MKTYEMVDDP STDVVVAWSA  60
GNNSFIVKNP HQFSQHLLPR YFKHCNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLSTIHRKKA TQSQQQQHYL QGCGTSSGFG NEGTCESYDF TGEVERLKQD KNLIVQDLDQ  180
LKKRQVDTDR EVEAMNKRLQ VTEQRPQQMI SFLARVIENP SLIDQILHNR QLGSRKRRRL  240
GTQNIPQLAA NGLVPDGLVT SDHGEISIHD GLIKKGLAAD GFVNLNDSTT DILPYEFEFE  300
TGTGLVSKDV IPASVDLEHM SEIYACDSES CIDTSFEEDD LGWTDLDDMM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-233913320125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238RKRRR
2235239KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.184660.0needle
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736593.13e-74PREDICTED: heat shock factor protein HSF8-like isoform X2
SwissprotQ84T612e-71HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A176VRM42e-73A0A176VRM4_MARPO; Uncharacterized protein
TrEMBLA0A2R6VWN43e-73A0A2R6VWN4_MARPO; Uncharacterized protein
TrEMBLA9SJ662e-73A9SJ66_PHYPA; Predicted protein (Fragment)
STRINGGorai.008G225200.13e-73(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-69heat shock transcription factor A2
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]