PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002212
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 351aa    MW: 37938 Da    PI: 6.9169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21716276PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-67748PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1865115155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p   + r +r +lg+f taeeAa a++ a++ l+g
  Pta002212  65 CSYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATAEEAALAYDGAARTLYG 115
                67*****999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1265115IPR001471AP2/ERF domain
CDDcd000181.46E-2965124No hitNo description
SuperFamilySSF541713.2E-2166125IPR016177DNA-binding domain
PROSITE profilePS5103221.82566123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3066125IPR001471AP2/ERF domain
SMARTSM003801.6E-3466129IPR001471AP2/ERF domain
PRINTSPR003671.5E-106778IPR001471AP2/ERF domain
PRINTSPR003671.5E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MKSGTRNSAS TSSSVLARWA DRNRSSASLA QGSNNNSKLK QRKIPAKGSK KGCMKGKGGP  60
ENALCSYRGV RQRTWGKWVA EIREPNRGAR LWLGTFATAE EAALAYDGAA RTLYGSYARL  120
NLPDSSSSTS ASSASATATF QVNITSSITR RRTAHFSKPN KNSLSNPYDQ EDSPSSCSTA  180
EAATPKPYKA KSNDSEAKTL PDAQKTLADA KKALPDAKPS IEDAETFGEM FKPFDLLYTD  240
PSPTTGSSGL WESLSDVASP ITRDPISGHL AAAASCTDLE LIDYSLMQPS AMELSSLEDL  300
NFQTHEPDQL APATEITQDL NAFMEFQVDN GLRYCHSEGY DPFQLSWIST V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1767123360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.194720.0embryo
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-21DRE-binding protein 2A